There are a few pests and diseases that affect onions which is why moving them around the garden each year makes sense.
Onion white rot
Onion white rot is a fluffy white fungal growth that attacks the base plate of the onion, attacking the roots and spreading into the bulb. The leaves turn yellow and wilt as the root dies off. Remove and destroy affected plants and do not grow any of the onion family in the same patch of ground for at least eight years. Make sure when you are planting onion sets that you only plant the best quality firm bulbs with no sign of rot on them.
Onion rust disease
Onion rust disease is commonly found on leek foliage, but also can affect onions. Yellow raised patches appear on the leaves in moist weather. Remove infected leaves to stop the spread, and usually plants will recover. Improve air circulation, and ensure the seedlings are thinned and not growing too closely.
Onion neck rot
The onion neck rot fungus attacks the neck of the onion, causing the stem to bend over prematurely and the top section of the bulb starts to rot. Avoid applying high nitrogen fertilisers, and make sure that plants are not watered too heavily. Never grow onions in the same area of ground two years running.
Onion downy mildew
Downy mildew goes for the leaves of your onions and turns them blotchy grey and slimy. Air circulation is the key, so make sure you weed well between the rows, and thin the plants in good time. There are some varieties that show resistance to all these fungal attacks, Norstar being one of them.
Onion eelworm
Onion eelworm are microscopic nematodes that attack the foliage and bulbs, leaving them stunted and prone to rot if they get as far as harvest stage. Remove and destroy infested plants, and make sure another type of crop (e.g. any of the brassica family) is grown on that patch of land to break the life cycle of this pest.
Onion fly
Onion fly are much easier to spot with the naked eye, as the maggots are up to 8mm long, although they do live underground. You will spot them when you pull up a poor looking wilted onion and see it has been eaten off at the root. Try to pull up all the affected onions gently, maggots and all, and that will stop them pupating in the ground to affect future crops. Companion planting with a stronger smelling plant (e.g. carrots or coriander) can deter the adult flies, and enviromesh will offer physical protection.
Onion thrips
Tiny flies and nymphs leave a tell-tale white mottling on the leaves of onions, but rarely kill the plant. They love hot dry weather, so at least you shouldn’t have the fungal infestations if you have the thrips!
Why are my onions so small?
This is usually caused by them being grown too close together, so that they are competing with their neighbours for light, food and water. If you have grown them from seed thin them out in good time, having watered the row first to avoid root disturbance. Make sure the ground is fertile but not too rich in nitrogen, as this can exacerbate fungal attacks.